FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007964084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48190017
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGATACG1188395724.660620061619817Illumina Single End PCR Primer 1 (100% over 8bp)
TGTGCCGT1173009424.341336090418896No Hit
CCACAGAA1167115224.219024450645037No Hit
GACTGTTC1114998823.137547347202634No Hit
GACTGTTA811050.1683024930246445No Hit
GCCTGTTC805300.1671092998369351No Hit
TGTGCCGG642330.13329109221936983No Hit
TGTGCCGA532380.11047516335177886No Hit
CCACACAA499520.10365632367384306No Hit
CCCCAGAA489460.10156875437499846No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)