FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007964088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37777401
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA1044896027.659287625424522No Hit
CTAGCTGT1000975926.496685147821573No Hit
TATTGGTG903209323.908719924909605No Hit
AGGCTACC775293820.522687624805105No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)