FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007964092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36739014
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCAACAA1015702527.646427854596205No Hit
CTAGCTGT970747426.422794035789853No Hit
TATTGGTG875611923.833298846833507No Hit
AGGCTACC751346120.450905405354646No Hit
AGGCTCCC392690.10688637425054466No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)