FastQCFastQC Report
Wed 31 May 2023
EGAF00007964595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28927934
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCTG758955126.23606303858409No Hit
CTTTCGAC741283025.625162170240017No Hit
ACGGGACT701727824.257791793911036No Hit
GAACATGA621686121.490857245456933No Hit
CTTTCGCC807510.27914541010775257No Hit
TGCATCTA407800.1409710074698041No Hit
CCGGGACT367920.12718502468928478No Hit
ACGGGCCT303140.10479144483667585No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)