FastQCFastQC Report
Mon 22 May 2023
EGAF00007964599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27817848
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCTG726939626.13212927182577No Hit
CTTTCGAC707995725.45113123056823No Hit
ACGGGACT671574224.141845911301264No Hit
GAACATGA594821521.382728814968No Hit
CTTTCGCC954820.34324006659321743No Hit
CCGGGACT474480.17056675268338514No Hit
TGCATCTA393890.1415961435981676No Hit
ACGGGCCT370230.13309081277602783No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)