FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007964607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007964607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27507131
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCTG714892925.989366175629147No Hit
CTTTCGAC694322825.24155645312483No Hit
ACGGGACT658290323.931623403400376No Hit
GAACATGA583417221.209671048572822No Hit
CTTTCGCC1222820.44454654322182857No Hit
CCGGGACT605920.22027742551558718No Hit
ACGGGCCT473340.17207901471076717No Hit
TGCATCTA389850.14172688529385344No Hit
GAACATGC327690.11912910873911205No Hit
ACGGGACA317510.11542825022355112No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)