FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007965363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46826334
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTCATA1247030226.630959408438848No Hit
CTCATCAT1162308324.82168046723453No Hit
TAACGTCC1147908524.51416546937029No Hit
GCTGAGGG1029350821.982305939217877No Hit
GCTGAGGA809840.17294541998525872No Hit
CTCATCAA579760.1238106745661533No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)