FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007965367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45138388
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTCATA1198254726.546244850392085No Hit
CTCATCAT1110865824.610223120949733No Hit
TAACGTCC1105329824.487578067697058No Hit
GCTGAGGG987012921.86637458121012No Hit
GCTGAGGA778580.1724873294101686No Hit
CTCATCAA583630.12929792707705912No Hit
TAACGTCA454520.10069477890969433No Hit
CTAATCAT454350.10065711695331256No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)