FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007965369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45138388
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG1260140.27917257479376534No Hit
ACGTGTTGAAATGCGG619530.13725124610121212No Hit
GGTCAAGGACGGAAGT559210.12388789781327592No Hit
CTAATCTACTTCTCGC553200.12255643688471995No Hit
TCGGCTTACAATAGCA542360.12015493331308154No Hit
CATGTCAGAAGCTTGT533070.11809681816727705No Hit
TGCGACGACAGACAAT522790.11581937751077864No Hit
CGTGGAAGACGACTAT515090.11411351242760376No Hit
AGGTCAGGACAGCACC510540.11310550124209132No Hit
CCTCCCTTGTTTCGCC497030.11011248341433905No Hit
AAATAGGTGTTTGGGT496530.11000171295439262No Hit
AGTTTCTTGAGTGAGC491250.10883197689735842No Hit
CTATGGATGCCACATA485840.10763344052073813No Hit
AACGAGGTGTGAACAA484980.1074429153296303No Hit
AACGTAGCTTAGCTTG484370.10730777536849566No Hit
TTGACGTGATGCACCG482000.10678272338834963No Hit
ATAAGACGAGGCCTTG474080.10502811930279833No Hit
CGACCTTACACTAGGG466530.10335548535760737No Hit
CCTACTGTGCAGGGTA465670.10316496016649954No Hit
TATCTCCCTCGAGGAT463280.10263547736795564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)