FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007965375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44707192
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTCATA1181952026.437625516717755No Hit
TAACGTCC1090689024.396276106985205No Hit
CTCATCAT1090206824.38549037031894No Hit
GCTGAGGG971167121.72283824043344No Hit
GCTGAGGA762870.17063697491893473No Hit
CTCATCAA697690.15605766517387182No Hit
CTAATCAT515850.11538411985257316No Hit
TAACGTCA509140.11388324276774082No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)