FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007965377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44707192
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGG1166970.26102511649579785No Hit
ACGTGTTGAAATGCGG599630.1341238340354724No Hit
GGTCAAGGACGGAAGT543560.12158222775431747No Hit
CTAATCTACTTCTCGC536860.1200835874460646No Hit
TCGGCTTACAATAGCA529000.11832548105459184No Hit
CATGTCAGAAGCTTGT511550.11442230592339594No Hit
TGCGACGACAGACAAT506600.11331510151655243No Hit
CGTGGAAGACGACTAT500640.11198198267518122No Hit
AGGTCAGGACAGCACC491110.10985033459493497No Hit
CCTCCCTTGTTTCGCC478130.10694699859476749No Hit
AAATAGGTGTTTGGGT474400.10611268093062075No Hit
AACGTAGCTTAGCTTG473970.10601649953770301No Hit
AACGAGGTGTGAACAA472870.10577045411396002No Hit
CTATGGATGCCACATA471300.10541928019098135No Hit
AGTTTCTTGAGTGAGC471260.10541033308466342No Hit
TTGACGTGATGCACCG463700.10371932999057511No Hit
ATAAGACGAGGCCTTG457510.10233476528787584No Hit
TATCTCCCTCGAGGAT452840.10129019062525778No Hit
CCTACTGTGCAGGGTA452140.10113361626469407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)