FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007965379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23850464
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATGGAA680843328.54633352206481No Hit
ACTACTGT616132625.833149409588007No Hit
GACCTCTC551697423.131516435068097No Hit
CGGGAACG468341219.636565561156377No Hit
GCCCTCTC2544931.0670358446695207No Hit
TTATGAAA635340.2663847546110633No Hit
CGGGACCG327670.13738516785249963No Hit
GACCTCTA251000.10523904272889618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)