FastQCFastQC Report
Mon 22 May 2023
EGAF00007965387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23999436
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATGGAA684281028.51237837422513No Hit
ACTACTGT621304125.888279207894723No Hit
GACCTCTC553999623.083859137356395No Hit
CGGGAACG471133519.63102382905998No Hit
GCCCTCTC2628591.0952715722152804No Hit
TTATGAAA637540.26564790939253735No Hit
CGGGACCG320480.1335364714404122No Hit
GACCTCTA251550.10481496315163406No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)