FastQCFastQC Report
Thu 1 Jun 2023
EGAF00007965549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007965549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511093481
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACCTGTCGGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT21432890.4193536172299564No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG14539460.28447750833276625TruSeq Adapter, Index 27 (97% over 38bp)
TCACCTGTCGGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA13632250.266727135187232No Hit
TCACCTGTCGGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC5572420.1090293695215416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)