FastQCFastQC Report
Wed 8 May 2024
EGAF00007966586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429593
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41940.9762728908525045No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18000.41900124070922945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12690.2953958747000067No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7430.17295440102608747No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC4880.11359589192561331No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4840.11266477805737059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)