FastQCFastQC Report
Wed 8 May 2024
EGAF00007966587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452498
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11500.2541447697006396No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9830.2172385292310684No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9080.20066387033754846No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCAGAT7840.1732604343002621No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7700.1701664979734717No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7370.16287364806032292No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG7080.15646477995482855No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6480.14320505284001256No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6430.14210007558044455No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5300.11712758951420779No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4980.11005573505297261No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4940.1091717532453182No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4890.10806677598575022No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)