FastQCFastQC Report
Wed 8 May 2024
EGAF00007966588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452498
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44860.9913855972844079No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15390.3401120004950298No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9910.21900649284637722No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8810.19469699313588126No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7910.1748074024636573No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC7740.1710504797811261No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC7670.1695035116177309No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7410.16375762986797732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7160.15823274357013734No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6810.15049790275316133No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.14762496187828456No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5610.12397844852352939No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5130.1133706668316766No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5060.11182369866828142No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5050.11160270321636781No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4910.1085087668895774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)