FastQCFastQC Report
Wed 8 May 2024
EGAF00007966590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431070
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40870.9481058760758113No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9210.21365439487786206No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7680.1781613195072726No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5540.12851741016540238No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5090.11807827035052311No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4480.10392743637924234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)