FastQCFastQC Report
Wed 8 May 2024
EGAF00007966592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413427
Total Bases12.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35030.8473079890766689No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22960.5553580196745738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19120.46247584216802484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12890.3117841843904728No Hit
CAGCCGCAGCAGCAACAGCCTCAGCAACAGC10100.24429947729587087No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9640.23317296644873217No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8150.19713274653082646No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8110.1961652238484666No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7900.1910857297660772No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6410.1550455098481715No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6390.15456174850699156No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6060.1465796863775225No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5460.13206684614212424No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5220.12626171004796494No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5010.12118221596557555No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC4990.1206984546243956No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4960.1199728126126257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4940.11948905127144574No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4820.11658648322436609No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4410.10666937573017728No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4300.1040086883536876No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4280.10352492701250764No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4210.10183176231837786No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4180.10110612030660793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)