FastQCFastQC Report
Wed 8 May 2024
EGAF00007966593

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966593
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409962
Total Bases18 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT38330.9349647040457407No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT18800.45857908781789536No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG16130.3934511003458857No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13510.32954273810743434No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT12820.31271190988433073No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG12420.3029549080158649No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT11280.27514745269073715No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT10190.24855962259916772No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG8460.20636058951805292No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8110.19782321288314528No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7780.18977368634166095No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7320.1785531341929252No Hit
CCACTGCGCGATGCCGAAGGCACCGGAGGAAGCATTCTTCGCGT6930.169040057371171No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6450.15733165512901195No Hit
CCAGAAGGTACGGATCTGGTTTTTGCGTTTATCGTTCAGGGCAC5810.14172045213946657No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5430.132451300364424No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5380.13123167513086578No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5230.1275727994301911No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5210.1270849493367678No Hit
TTTCACGTGTTCATACTTAGAAACATCGAAACCGTCCTGTTTGG4900.11952327288870675No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA4730.11537654709460876No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4660.11366907176762725No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT4440.108302720739971No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA4410.10757094559983608No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT4360.10635132036627785No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA4100.10000926915177503No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)