FastQCFastQC Report
Wed 8 May 2024
EGAF00007966594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409962
Total Bases12.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT37530.9154507003088092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35600.8683731662934614No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19350.4719949653870359No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG16560.4039398773544865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16440.40101277679394676No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC14220.34686141642396123No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13520.32978666315414595No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT12350.3012474326888834No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT11580.2824652040920866No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC10620.25904839960776854No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC10120.2468521472721862No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC7640.18635873568769787No Hit
GACGTCGGTGGCGAAGGTGCAGAAAAAATGT7140.17416248335211554No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7090.17294285811855734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7000.17074753269815252No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6910.1685522072777477No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5750.1402569018591967No Hit
ACCGACGTTCTGGAATCCGCGACTGCAGACA5720.13952512671906175No Hit
CTGCACGACGACGCTAACTTTCTGGAACATG5620.1370858762519453No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5390.13147560017757745No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5330.13001204989730755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5310.12952419980388427No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4870.11879149774857183No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4840.11805972260843688No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA4770.11635224728145535No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT4450.10854664578668267No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4410.10757094559983608No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG4280.10439991999258467No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4180.10196066952546821No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA4110.10025319419848669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)