FastQCFastQC Report
Wed 8 May 2024
EGAF00007966595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558254
Total Bases24.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT31550.5651549294765466No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC20220.36220071866927955No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19980.3579016003467955No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA19550.350199013352345No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17980.32207561432609527No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17200.3081034797780222No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14560.26081317823069783No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG14350.25705144969852434No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13590.2434375750106582No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG12780.22892805067227462No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12710.22767414116155013No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11820.2117315773823385No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG10350.1853994776571238No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10000.17912993010350128No Hit
GCTCGGCTCCTGCTGCATCTGGGTGATTTCGCGGCCAGCACGCA9030.16175432688346164No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8200.14688654268487103No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6670.11947966337903534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)