FastQCFastQC Report
Wed 8 May 2024
EGAF00007966596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558254
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40040.7172362401344191No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA32100.5750070756322391No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC20610.3691867859433161No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18440.33031559111085634No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC18430.33013646118075285No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15240.27299401347773594No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG15230.27281488354763245No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14570.2609923081608013No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT13740.24612452396221077No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13390.23985497640858822No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC12990.23268977920444817No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11500.20599941961902646No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10100.18092122940453628No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA9920.17769689066267325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9430.1689195240876017No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8860.15870911807170213No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG6960.12467443135203689No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG5660.10138754043858171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)