FastQCFastQC Report
Wed 8 May 2024
EGAF00007966597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556580
Total Bases24.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29160.5239139027633044No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26940.4840274533759747No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24670.4432426605339754No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17320.3111861726975457No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16440.295375327895361No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT16330.2933989722950879No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11090.1992525782457149No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10960.19691688526357395No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10770.19350318013582954No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10580.1900894750080851No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10500.18865212548061375No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC10010.1798483596248518No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC9890.17769233533364476No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9750.1751769736605699No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9350.1679902260232132No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9320.16745121995041143No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9080.1631391713679974No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGTGCG8610.1546947428941033No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8430.15146070645729276No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8140.14625031442020914No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8080.14517230227460565No Hit
CTCCAGGGTCGCGACGGTGTTTTCGATTGCTTCCGTAGTCGGGG7880.14157892845592726No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7670.137805885946315No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7460.13403284343670271No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7440.13367350605483488No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7330.1316971504545618No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG7310.13133781307269396No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7200.12936145747242087No Hit
GGTCGGGGTGCTGGTTGGTTCACCAGAGGCGATGGTGTTGATAG6830.1227137159078659No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6740.12109669768946064No Hit
GGTGGAGTGCACAGTCGGTTCTGCGCTGGCGATGGTGTTAATCG6740.12109669768946064No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6610.1187610047073197No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6370.11444895612490569No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5820.10456717812354019No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5820.10456717812354019No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5790.10402817205073843No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5760.10348916597793668No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5750.10330949728700276No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5750.10330949728700276No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5680.10205181645046534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)