FastQCFastQC Report
Wed 8 May 2024
EGAF00007966598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556580
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44410.7979086564375291No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36360.6532753602357253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29230.5251715835998418No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24610.44216464838837183No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18970.3408315067016422No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17740.3187322577167703No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17390.31244385353408316No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16620.2986093643321715No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13910.24991914908907972No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13170.2366236659599698No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11470.2060799885012038No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10900.19583887311797046No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10540.18937080024434944No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG10360.1861367638075389No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10330.18559775773473716No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10230.18380107082539798No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10120.1818247152251249No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC9640.1732006180602968No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9040.16242049660426175No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8870.15936612885838514No Hit
ACCATGACCCGTCACCCGCACCCACATCTGT8410.15110136907542493No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC8190.14714865787487874No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8140.14625031442020914No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7990.14355528405620036No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7720.1387042294009846No Hit
ACCGTCCCGGCAAAATCCTGCCAGGCTCAGC7550.13564986165510798No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7530.13529052427324015No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7460.13403284343670271No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG7330.1316971504545618No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7310.13133781307269396No Hit
TCCTACACCAACGGCAAACTGACTATCACCC7190.12918178878148695No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7120.12792410794494952No Hit
ACCGTTCCTGCCAAATCCTGCCAGGACCAGC6670.11983901685292321No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6270.11265226921556651No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6230.11193359445183082No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5970.10726220848754896No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5790.10402817205073843No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5660.1016924790685975No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5650.10151281037766359No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5590.10043479823206009No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)