FastQCFastQC Report
Wed 8 May 2024
EGAF00007966599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541523
Total Bases23.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12400.22898381047527067No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7400.13665162883201637No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5760.10636667325302895No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5560.10267338598729879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)