FastQCFastQC Report
Wed 8 May 2024
EGAF00007966600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541523
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12550.2317537759245683No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10030.18521835637636813No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.14071424482431955No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5820.10747465943274802No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC5490.10138073544429323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)