FastQCFastQC Report
Wed 8 May 2024
EGAF00007966601

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966601
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536309
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCGCAC11270.21014004985931617No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT10390.19373159876116194No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7510.14003121334902083No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6770.12623319765284566No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6560.12231754454987702No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5850.10907890786841168No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5810.10833306918213194No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5550.10348511772131364No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)