FastQCFastQC Report
Wed 8 May 2024
EGAF00007966602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536309
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAACTGTCCTCTGGCTACCGCATCAACCGTG11840.2207682511388024No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT11210.20902129182989657No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10970.20454625971221815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10200.19018886500133317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9440.17601792996201818No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.13499680221663257No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7180.13387804418721297No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7090.13219990714308355No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6650.12399568159400644No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5930.11057058524097116No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5730.10684139180957247No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5640.10516325476544305No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5580.10404449673602344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)