FastQCFastQC Report
Wed 8 May 2024
EGAF00007966605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505717
Total Bases22.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA48990.968723614195291No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA45070.8912099059355331No Hit
GGTGCGTTTACGTACCGGCTGACGGCGCTGCGGCAGCGGGGTCG24140.4773420707628971No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT21440.42395252680847195No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16360.32350108855347953No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15990.31618474364120647No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14220.28118493149330553No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC13770.272286674167568No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13030.2576539843430219No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11820.23372755908937212No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11380.22502704081531766No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10120.20011192030325262No Hit
CTGCAGCTCGCGAGCGCTGATGTAACCATCGCCATCTTCATCGA10030.1983322688381051No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10020.19813452978642204No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG9430.18646792573712176No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8590.16985784539574506No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8490.16788045487891448No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8440.1668917596204992No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7710.15245680884763613No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7050.13940603143655445No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC7030.13901055333318832No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6970.13782411902309No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6680.13208968652428135No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6520.12892586169735248No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC5910.11686377954468606No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5880.1162705623896369No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5830.11528186713122163No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5450.10776778316726547No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5440.10757004411558244No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5270.10420848023697048No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5060.10005596015162631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)