FastQCFastQC Report
Wed 8 May 2024
EGAF00007966606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505717
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT104772.0717120444833768No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA35290.6978211133895044No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA25060.4955340635177382No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT23070.4561839922328101No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18720.3701675047506807No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17790.3517777729441565No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15760.31163674545249614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14100.2788120628731089No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12400.24519642408698936No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10630.21019661193908845No Hit
TCCCTGAACGACTCTTACTTCGCGTATGGCG10070.19912322504483734No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC9260.18310636185850981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8930.17658097315296897No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8670.1714397578092095No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7620.15067715738248863No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA7530.14889750591734113No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7510.148502027813975No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7470.14771107160724278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7160.14158116100506804No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6950.13742864091972387No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6710.13268290367933055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6700.13248516462764748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6540.12932133980071858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6450.12754168833557109No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6360.1257620368704236No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5830.11528186713122163No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5750.11369995471775715No Hit
GACGACAACACCAAGCCATGGAAACAGCTGT5670.11211804230429272No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5550.10974517368409603No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.10262656782350603No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5080.10045143825499242No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)