FastQCFastQC Report
Wed 8 May 2024
EGAF00007966609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517834
Total Bases22.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT31720.61255151264691No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC30940.5974887705326417No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25570.49378758443825627No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC24830.47949729063754026No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20430.39452797614679613No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18550.35822290540984175No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16170.31226223075348475No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15080.2912130142091867No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC14620.2823298586033362No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14440.27885384119235124No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14340.27692272040847066No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13230.2554872797073966No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12630.2439005550041133No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12620.24370744292572522No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11770.2272929162627406No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11080.2139681828539648No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9670.18673937980124905No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8920.17225597392214492No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8820.1703248531382644No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8710.1682006202759958No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8360.16144169753241386No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8130.1570001197294886No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7640.1475376278884739No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7500.14483405879104116No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7300.14097181722328003No Hit
GCAACCGGTGCGTTCTGCCAGGGACGGGTCCAGGTCATCAGACA7140.13788202396907118No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG6730.12996442875516093No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6690.1291919804416087No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6450.12455729056029538No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6170.11915015236542985No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5940.11470857456250458No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5910.11412923832734043No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5860.11316367793540016No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5670.10949454844602712No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5640.10891521221086294No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5460.10543919479987796No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5450.10524608272148991No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5310.10254251362405713No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5240.10119072907534075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)