FastQCFastQC Report
Wed 8 May 2024
EGAF00007966613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467909
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7260.15515837481219638No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6750.14425881955679418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6010.12844377859797523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)