FastQCFastQC Report
Wed 8 May 2024
EGAF00007966615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503828
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9970.1978849924974396No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8850.17565518391196996No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7760.15402081662789682No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6520.12940924283684113No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6490.12881380153544464No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5370.106583992949975No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5370.106583992949975No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5250.10420222774438896No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)