FastQCFastQC Report
Wed 8 May 2024
EGAF00007966616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503828
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11430.22686313583206966No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11080.21991632064911043No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10330.2050302881141977No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7990.15858586660527005No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7110.14111958843097247No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6590.130798605873433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5950.1180958581103075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5690.11293536683153775No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5260.10440070817818779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)