FastQCFastQC Report
Wed 8 May 2024
EGAF00007966619

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966619
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429643
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11840.27557763073062985No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8980.20901073682103513No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7590.1766582953754629No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7460.1736325274704813No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5630.13103902542343293No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4880.1135826721254623No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4660.10846214182472425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)