FastQCFastQC Report
Wed 8 May 2024
EGAF00007966620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429643
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21410.4983206988127352No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19350.4503739150876426No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11700.272319111448342No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7850.18270983118542605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7250.16874474854704952No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6640.15454691453136674No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5060.11777219691697526No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT4690.10916039595664306No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4570.10636737942896776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)