FastQCFastQC Report
Wed 8 May 2024
EGAF00007966624

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966624
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526357
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44900.8530332074998528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16210.30796588627110494No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9040.17174655224495922No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8020.15236806958015187No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7730.1468585009793733No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6700.1272900331904012No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6340.12045056872046918No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6180.11741080673383275No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5880.1117112530088894No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5840.11095131251223028No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5750.1092414463947473No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)