FastQCFastQC Report
Wed 8 May 2024
EGAF00007966626

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966626
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570507
Total Bases17.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46140.8087543185272047No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14560.2552115924957976No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11150.19544019617638345No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10270.18001531970685722No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.164590443237331No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8320.14583519571188436No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7930.13899917091288977No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7090.12427542519197836No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5930.10394263348214834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)