FastQCFastQC Report
Wed 8 May 2024
EGAF00007966628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547654
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT42130.7692813345652547No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27620.5043330277876177No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13730.25070573756422854No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10100.18442301160951988No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9540.17419757730245738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8240.1504599619467766No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7730.14114751284570184No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7400.13512181048618288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)