FastQCFastQC Report
Wed 8 May 2024
EGAF00007966630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558213
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46650.8357025006583508No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24750.4433791402206685No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14100.25259175261056266No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10150.18183023326221354No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10100.1809345178274243No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8660.1551379133054945No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8130.14564332969672866No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6950.12450444543570287No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5760.10318641808771921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)