FastQCFastQC Report
Wed 8 May 2024
EGAF00007966632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506176
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45180.8925749146541915No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27670.5466478062966241No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12860.25406182829687696No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8870.17523549121254267No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT8050.1590355923631306No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7450.14718200783917057No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7300.14421861170818054No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG6690.1321674674421545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)