FastQCFastQC Report
Wed 8 May 2024
EGAF00007966633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477574
Total Bases21 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13110.27451243158128374No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11970.2506417853568243No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10280.21525459928723087No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8740.1830082877208558No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG6080.1273101131971171No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5960.12479741359454243No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5900.12354106379325507No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5490.11495600681779158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)