FastQCFastQC Report
Wed 8 May 2024
EGAF00007966634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477574
Total Bases14.8 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28480.5963473723443906No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28040.5871341404682835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13120.27472182321483163No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12520.2621583252019582No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11610.24310368654910022No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10340.2165109490885182No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6510.13631395343967637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)