FastQCFastQC Report
Wed 8 May 2024
EGAF00007966638

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966638
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483851
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29540.6105185273978974No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18380.37986900926111555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15130.312699570735619No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14400.2976122814668152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10140.209568648199549No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8150.16844028430239888No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7490.1547997214018365No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6750.1395057569375696No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6410.13247880029182538No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6270.12958534755534246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5900.12193836532320901No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5650.11677148543663236No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5130.1060243752725529No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5020.10375094812245919No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)