FastQCFastQC Report
Wed 8 May 2024
EGAF00007966639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473325
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT24300.5133893202345111No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24160.5104315216817198No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16370.34585115935139704No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15820.33423123646543074No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12400.2619764432472403No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12070.25500448951566046No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10640.2247926900121481No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9360.19774996038662654No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9270.19584851845983203No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9170.19373580520783817No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9160.1935245338826388No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA8650.18274969629747004No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8490.17936935509427984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7530.15908730787513864No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7530.15908730787513864No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6960.14704484233877357No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6740.14239687318438704No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6350.13415729150161093No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6320.1335234775260128No Hit
CGGCTGCTGTGGTTGCAGCGGGAATGGCTGTTGAGGCTGCTGCG6170.13035440764802197No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5640.11915702741245446No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5240.11070617440447894No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5230.11049490307927956No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5090.10753710452648814No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4930.10415676332329794No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4750.10035387946970899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)