FastQCFastQC Report
Wed 8 May 2024
EGAF00007966640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473325
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32670.6902234194263983No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29590.6251518512649871No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25020.528600855648867No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18170.3838799978872868No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16740.3536681983837744No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16490.3483864152537897No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15490.3272592827338509No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14180.2995827391327312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13290.28077959118998574No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12890.27232873818201025No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10210.21570802302857445No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9790.20683462737020017No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9470.20007394496381978No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9050.19120054930544553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8990.1899329213542492No Hit
GCCCAGTCTTCCGGCGATCGTCAGACCGTCT8340.176200285216289No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8160.17239740136270004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7810.16500290498072148No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7720.163101463053927No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7600.16056620715153436No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6950.14683357101357417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6770.1430306871599852No Hit
TTTCCTCAGACCCAGCAGTCTTTCCCGCTGC6180.13056567897322136No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5860.12380499656684096No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5480.11577668620926425No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5240.11070617440447894No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.10817091850208631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)