FastQCFastQC Report
Wed 8 May 2024
EGAF00007966642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429050
Total Bases13.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20890.4868896399021093No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15490.3610301829623587No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT13950.32513693042768904No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9900.2307423377228761No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8500.19811210814590377No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7690.17923318960494114No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7510.17503787437361612No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7460.1738725090315814No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7050.1643165132268966No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6910.16105349026919938No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6330.14753525230159656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5900.1375131103600979No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5710.13308472206036592No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5630.13122013751311035No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5460.1272578953501923No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4950.11537116886143806No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC4790.11164199976692693No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4750.11070970749329914No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4490.10464980771471856No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4450.10371751544109079No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4380.10208600396224216No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4320.10068756555180049No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4300.1002214194149866No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)