FastQCFastQC Report
Wed 8 May 2024
EGAF00007966644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473573
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24350.5141762727182504No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14600.3082946029440023No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12830.27091916135421573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.20377006290476862No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8970.18941113619230826No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7150.15097989116778196No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6280.13260891140331058No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5900.1245848052992886No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5740.12120623430812145No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5510.11634953850831868No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5470.11550489576052689No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5020.10600266484786927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5000.1055803434739734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)