FastQCFastQC Report
Wed 8 May 2024
EGAF00007966646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007966646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491017
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23330.47513629874322066No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17290.35212630112603027No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10600.21587847263944016No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG9280.1889954930277363No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8840.18003449982383501No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7130.14520882169049137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6930.14113564296144532No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.13461855699497166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5990.12199170293492893No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5730.11669657058716908No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5600.11404900441328915No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5050.10284776290841253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)